The UCSC Genome Browser Database: 2008 update.

Research output: Contribution to journalJournal articleResearchpeer-review

  • D Karolchik
  • R M Kuhn
  • R Baertsch
  • G P Barber
  • H Clawson
  • M Diekhans
  • B Giardine
  • R A Harte
  • A S Hinrichs
  • F Hsu
  • K M Kober
  • W Miller
  • Jakob Skou Pedersen
  • A Pohl
  • B J Raney
  • B Rhead
  • K R Rosenbloom
  • K E Smith
  • M Stanke
  • A Thakkapallayil
  • And 5 others
  • H Trumbower
  • T Wang
  • A S Zweig
  • D Haussler
  • W J Kent
The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/.
Original languageEnglish
JournalNucleic Acids Research
Volume36
Issue numberDatabase issue
Pages (from-to)D773-9
ISSN0305-1048
DOIs
Publication statusPublished - 2007

    Research areas

  • Faculty of Science - Animals, Computer Graphics, Databases, Nucleic Acid, Genomics, Humans, Internet, Invertebrates, Sequence Alignment, User-Computer Interface, Variation (Genetics), Vertebrates

ID: 4960251