Samir Bhatt

Samir Bhatt

Professor

ORCID: 0000-0002-0891-4611

Introductory remarks on publicationslist

Google Scholar publication list https://scholar.google.com/citations?user=tL0x_vUAAAAJ&hl=en


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  1. Evidence of initial success for China exiting COVID-19 social distancing policy after achieving containment

    Ainslie, K. E. C., Walters, C. E., Fu, H., Bhatia, S., Wang, H., Xi, X., Baguelin, M., Bhatt, S., Boonyasiri, A., Boyd, O., Cattarino, L., Ciavarella, C., Cucunuba, Z., Cuomo-Dannenburg, G., Dighe, A., Dorigatti, I., van Elsland, S. L., John, R. F., Gaythorpe, K., Ghani, A. C. & 22 others, Green, W., Hamlet, A., Hinsley, W., Imai, N., Jørgensen, D., Knock, E., Laydon, D., Nedjati-Gilani, G., Okell, L. C., Siveroni, I., Thompson, H. A., Unwin, H. J. T., Verity, R., Vollmer, M., Walker, P. G. T., Wang, Y., Watson, O. J., Whittaker, C., Winskill, P., Donnelly, C. A., Ferguson, N. M. & Riley, S., 2021, In: Wellcome Open Research. 5, p. 1-14 14 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  2. Published

    A dataset of non-pharmaceutical interventions on SARS-CoV-2 in Europe

    Altman, G., Ahuja, J., Monrad, J. T., Dhaliwal, G., Rogers-Smith, C., Leech, G., Snodin, B., Sandbrink, J. B., Finnveden, L., Norman, A. J., Oehm, S. B., Sandkuehler, J. F., Kulveit, J., Flaxman, S., Gal, Y., Mishra, S., Bhatt, Samir, Sharma, M., Mindermann, S. & Brauner, J. M., 2022, In: Scientific Data. 9, 1, 9 p., 145.

    Research output: Contribution to journal › Editorial › Research › peer-review

  3. Published

    Long-Term Exposure to AIR Pollution and COVID-19 Mortality and Morbidity in DENmark: Who Is Most Susceptible? (AIRCODEN)

    Andersen, Zorana Jovanovic, Zhang, Jiawei, Lim, Youn-Hee, So, Rina, Jørgensen, J. T., Mortensen, Laust Hvas, Napolitano, George, Cole-Hunter, Thomas, Loft, Steffen, Bhatt, Samir, Hoek, G., Brunekreef, B., Westendorp, Rudi GJ, Ketzel, M., Brandt, J., Lange, Theis & Kølsen-Fisher, T., 2023, In: Research report (Health Effects Institute). 214, 41 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  4. Published

    Risk of hospitalisation associated with infection with SARS-CoV-2 omicron variant versus delta variant in Denmark: an observational cohort study

    Bager, P., Wohlfahrt, J., Bhatt, S., Stegger, M., Legarth, R., Møller, C. H., Skov, R. L., Valentiner-Branth, P., Voldstedlund, M., Fischer, T. K., Simonsen, L., Kirkby, N. S., Thomsen, M. K., Spiess, K., Marving, E., Larsen, N. B., Lillebaek, T., Ullum, H., Mølbak, K., Krause, T. G. & 28 others, Edslev, S. M., Sieber, R. N., Ingham, A. C., Overvad, M., Agermose Gram, M., Kristensen Lomholt, F., Hallundbæk, L., Hjorth Espensen, C., Gubbels, S., Karakis, M., Lauenborg Møller, K., Schytte Olsen, S., Harboe, Zitta F B Barrella, Klint Johannesen, C., van Wijhe, M., Holler, J. G., Dessau, R. B. C., Barfred Friis, M., Fuglsang-Damgaard, D., Pinholt, M., Vognbjerg Sydenham, T., Coia, J. E., Marmolin, E. S., Fomsgaard, A., Fonager, J., Rasmussen, M., Cohen, A. & the Omicron-Delta study group, T. O. S. G., 2022, In: The Lancet Infectious Diseases. 22, 7, p. 967-976 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Conflicting COVID-19 excess mortality estimates

    Bager, P., Nielsen, J., Bhatt, Samir, Nielsen, L., Krause, T. G., Vestergaard, L. S. & The EuroMOMO Network, T. E. N., 2023, In: The Lancet. 401, 10375, p. 432-433 2 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    An archetypes approach to malaria intervention impact mapping: a new framework and example application

    Bertozzi-Villa, A., Bever, C. A., Gerardin, J., Proctor, J. L., Wu, M., Harding, D., Hollingsworth, T. D., Bhatt, Samir & Gething, P. W., 2023, In: Malaria Journal. 22, 1, 22 p., 138.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. Published

    Semi-mechanistic Bayesian modelling of COVID-19 with renewal processes

    Bhatt, Samir, Ferguson, N., Flaxman, S., Gandy, A., Mishra, S. & Scott, J. A., 2023, In: Journal of the Royal Statistical Society. Series A: Statistics in Society. 186, 4, p. 633-636 4 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  8. E-pub ahead of print

    Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models

    Bouman, J. A., Hauser, A., Grimm, S. L., Wohlfender, M., Bhatt, Samir, Semenova, E., Gelman, A., Althaus, C. L. & Riou, J., 2024, (E-pub ahead of print) In: PLOS Computational Biology. 20, 4 April, e1011575.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Global disparities in SARS-CoV-2 genomic surveillance

    Brito, A. F., Semenova, E., Dudas, G., Hassler, G. W., Kalinich, C. C., Kraemer, M. U. G., Ho, J., Tegally, H., Githinji, G., Agoti, C. N., Matkin, L. E., Whittaker, C., Howden, B. P., Sintchenko, V., Zuckerman, N. S., Mor, O., Blankenship, H. M., de Oliveira, T., Lin, R. T. P., Siqueira, M. M. & 26 others, Resende, P. C., Vasconcelos, A. T. R., Spilki, F. R., Aguiar, R. S., Alexiev, I., Ivanov, I. N., Philipova, I., Carrington, C. V. F., Sahadeo, N. S. D., Gurry, C., Maurer-Stroh, S., Naidoo, D., von Eije, K. J., Perkins, M. D., van Kerkhove, M., Hill, S. C., Sabino, E. C., Pybus, O. G., Dye, C., Bhatt, Samir, Flaxman, S., Suchard, M. A., Grubaugh, N. D., Baele, G., Faria, N. R. & Danish Covid-19 Genome Consortium, D. C. G. C., 2022, (medRxiv).

    Research output: Working paper › Preprint › Research

  10. Published

    Global disparities in SARS-CoV-2 genomic surveillance

    Communicable Diseases Genomics Network (Australia and New Zealand), C. D. G. N. (. A. N. Z., COVID-19 Impact Project, C. I. P., Danish Covid-19 Genome Consortium, D. C. G. C., Fiocruz COVID-19 Genomic Surveillance Network, F. C. G. S. N., GISAID core curation team, G. C. C. T., Network for Genomic Surveillance in South Africa (NGS-SA), N. F. G. S. I. S. A. (., Swiss SARS-CoV-2 Sequencing Consortium, S. S. S. C. & Bulgarian SARS-CoV-2 sequencing group, B. S. S. G., 2022, In: Nature Communications. 13, p. 7003 1 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals

    Brizzi, A., Whittaker, C., Servo, L. M. S., Hawryluk, I., Prete, C. A., de Souza, W. M., Aguiar, R. S., Araujo, L. J. T., Bastos, L. S., Blenkinsop, A., Buss, L. F., Candido, D., Castro, M. C., Costa, S. F., Croda, J., de Souza Santos, A. A., Dye, C., Flaxman, S., Fonseca, P. L. C., Geddes, V. E. V. & 21 others, Gutierrez, B., Lemey, P., Levin, A. S., Mellan, T., Bonfim, D. M., Miscouridou, X., Mishra, S., Monod, M., Moreira, F. R. R., Nelson, B., Pereira, R. H. M., Ranzani, O., Schnekenberg, R. P., Semenova, E., Sonabend, R., Souza, R. P., Xi, X., Sabino, E. C., Faria, N. R., Bhatt, Samir & Ratmann, O., 2022, In: Nature Medicine. 28, 7, p. 1476-1485 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. Evolution and epidemic spread of SARS-CoV-2 in Brazil

    Candido, D. S., Claro, I. M., de Jesus, J. G., Souza, W. M., Moreira, F. R. R., Dellicour, S., Mellan, T. A., du Plessis, L., Pereira, R. H. M., Sales, F. C. S., Manuli, E. R., Thézé, J., Almeida, L., Menezes, M. T., Voloch, C. M., Fumagalli, M. J., Coletti, T. M., da Silva, C. A. M., Ramundo, M. S., Amorim, M. R. & 58 others, Hoeltgebaum, H. H., Mishra, S., Gill, M. S., Carvalho, L. M., Buss, L. F., Prete, C. A., Ashworth, J., Nakaya, H. I., Peixoto, P. S., Brady, O. J., Nicholls, S. M., Tanuri, A., Rossi, Á. D., Braga, C. K. V., Gerber, A. L., de Guimarães, A. P. C., Gaburo, N., Alencar, C. S., Ferreira, A. C. S., Lima, C. X., Levi, J. E., Granato, C., Ferreira, G. M., Francisco, R. S., Granja, F., Garcia, M. T., Moretti, M. L., Perroud, M. W., Castiñeiras, T. M. P. P., Lazari, C. S., Hill, S. C., de Souza Santos, A. A., Simeoni, C. L., Forato, J., Sposito, A. C., Schreiber, A. Z., Santos, M. N. N., de Sá, C. Z., Souza, R. P., Resende-Moreira, L. C., Teixeira, M. M., Hubner, J., Leme, P. A. F., Moreira, R. G., Nogueira, M. L., Ferguson, N. M., Costa, S. F., Proenca-Modena, J. L., Vasconcelos, A. T. R., Bhatt, Samir, Lemey, P., Wu, C. H., Rambaut, A., Loman, N. J., Aguiar, R. S., Pybus, O. G., Sabino, E. C. & Faria, N. R., 4 Sep 2020, In: Science. 369, 6508, p. 1255-1260 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  13. Published

    Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference

    Charles, G., Wolock, T. M., Winskill, P., Ghani, A., Bhatt, Samir & Flaxman, S., 2023, AAAI-23 Special Tracks. Williams, B., Chen, Y. & Neville, J. (eds.). AAAI Press, p. 14170-14177 8 p. (Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023, Vol. 37).

    Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review

  14. Quantifying Changes in Vaccine Coverage in Mainstream Media as a Result of the COVID-19 Outbreak: Text Mining Study

    Christensen, B., Laydon, D., Chelkowski, T., Jemielniak, D., Vollmer, M., Bhatt, Samir & Krawczyk, K., 2022, In: JMIR Infodemiology. 2, 2, 15 p., e35121.

    Research output: Contribution to journal › Journal article › Research › peer-review

  15. Published

    Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model

    Dan, S., Chen, Y., Chen, Y., Monod, M., Jaeger, V. K., Bhatt, Samir, Karch, A., Ratmann, O. & Machine Learning & Global Health network, M. L. &. G. H. N., 2023, In: PLOS Computational Biology. 19, 6, 30 p., e1011191.

    Research output: Contribution to journal › Journal article › Research › peer-review

  16. Published

    Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India

    Dhar, M. S., Marwal, R., Radhakrishnan, V. S., Ponnusamy, K., Jolly, B., Bhoyar, R. C., Sardana, V., Naushin, S., Rophina, M., Mellan, T. A., Mishra, S., Whittaker, C., Fatihi, S., Datta, M., Singh, P., Sharma, U., Ujjainiya, R., Bhatheja, N., Divakar, M. K., Singh, M. K. & 27 others, Imran, M., Senthivel, V., Maurya, R., Jha, N., Mehta, P., Vivekanand, A., Sharma, P., Arvinden, V. R., Chaudhary, U., Soni, N., Thukral, L., Flaxman, S., Bhatt, Samir, Pandey, R., Dash, D., Faruq, M., Lall, H., Gogia, H., Madan, P., Kulkarni, S., Chauhan, H., Sengupta, S., Kabra, S., Gupta, R. K., Singh, S. K., Agrawal, A. & Rakshit, P., 2021, In: Science. 374, 6570, p. 995-999 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  17. Published

    Mapping malaria incidence using routine health facility surveillance data in Uganda

    Epstein, A., Namuganga, J. F., Nabende, I., Kamya, E. V., Kamya, M. R., Dorsey, G., Sturrock, H., Bhatt, Samir, Rodriguez-Barraquer, I. & Greenhouse, B., 2023, In: BMJ Global Health. 8, 5, 10 p., 011137.

    Research output: Contribution to journal › Journal article › Research › peer-review

  18. Resurgence of malaria in Uganda despite sustained indoor residual spraying and repeated long lasting insecticidal net distributions

    Epstein, A., Maiteki-sebuguzi, C., Namuganga, J. F., Nankabirwa, J. I., Gonahasa, S., Opigo, J., Staedke, S. G., Rutazaana, D., Arinaitwe, E., Kamya, M. R., Bhatt, Samir, Rodríguez-barraquer, I., Greenhouse, B., Donnelly, M. J., Dorsey, G. & Ashton, R. (ed.), 2022, In: PLOS Global Public Health. 2, 9, 18 p., e0000676.

    Research output: Contribution to journal › Journal article › Research › peer-review

  19. Published

    Assessment of COVID-19 as the Underlying Cause of Death Among Children and Young People Aged 0 to 19 Years in the US

    Flaxman, S., Whittaker, C., Semenova, E., Rashid, T., Parks, R. M., Blenkinsop, A., Unwin, H. J. T., Mishra, S., Bhatt, Samir, Gurdasani, D. & Ratmann, O., 2023, In: JAMA network open. 6, 1, 9 p., e2253590.

    Research output: Contribution to journal › Journal article › Research › peer-review

  20. Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe

    Flaxman, S., Mishra, S., Gandy, A., Unwin, H. J. T., Mellan, T. A., Coupland, H., Whittaker, C., Zhu, H., Berah, T., Eaton, J. W., Monod, M., Perez-Guzman, P. N., Schmit, N., Cilloni, L., Ainslie, K. E. C., Baguelin, M., Boonyasiri, A., Boyd, O., Cattarino, L., Cooper, L. V. & 31 others, Cucunubá, Z., Cuomo-Dannenburg, G., Dighe, A., Djaafara, B., Dorigatti, I., van Elsland, S. L., FitzJohn, R. G., Gaythorpe, K. A. M., Geidelberg, L., Grassly, N. C., Green, W. D., Hallett, T., Hamlet, A., Hinsley, W., Jeffrey, B., Knock, E., Laydon, D. J., Nedjati-Gilani, G., Nouvellet, P., Parag, K. V., Siveroni, I., Thompson, H. A., Verity, R., Volz, E., Walters, C. E., Wang, H., Wang, Y., Watson, O. J., Winskill, P., Bhatt, Samir & Imperial College COVID-19 Response Team, I. C. C. R. T., 2020, In: Nature. 584, 7820, p. 257-261 5 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  21. No evidence of sustained nonzoonotic Plasmodium knowlesi transmission in Malaysia from modelling malaria case data

    Fornace, K. M., Topazian, H. M., Routledge, I., Asyraf, S., Jelip, J., Lindblade, K. A., Jeffree, M. S., Ruiz Cuenca, P., Bhatt, Samir, Ahmed, K., Ghani, A. C. & Drakeley, C., 2023, In: Nature Communications. 14, 1, 2945.

    Research output: Contribution to journal › Journal article › Research › peer-review

  22. Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China

    Fu, H., Wang, H., Xi, X., Boonyasiri, A., Wang, Y., Hinsley, W., Fraser, K. J., McCabe, R., Olivera Mesa, D., Skarp, J., Ledda, A., Dewé, T., Dighe, A., Winskill, P., van Elsland, S. L., Ainslie, K. E. C., Baguelin, M., Bhatt, S., Boyd, O., Brazeau, N. F. & 41 others, Cattarino, L., Charles, G., Coupland, Helen Louise, Cucunuba, Z. M., Cuomo-Dannenburg, G., Donnelly, C. A., Dorigatti, I., Eales, O. D., FitzJohn, R. G., Flaxman, S., Gaythorpe, K. A. M., Ghani, A. C., Green, W. D., Hamlet, A., Hauck, K., Haw, D. J., Jeffrey, B., Laydon, D. J., Lees, J. A., Mellan, T., Mishra, S., Nedjati-Gilani, G., Nouvellet, P., Okell, L., Parag, K. V., Ragonnet-Cronin, M., Riley, S., Schmit, N., Thompson, H. A., Unwin, H. J. T., Verity, R., Vollmer, M. A. C., Volz, E., Walker, P. G. T., Walters, C. E., Watson, O. J., Whittaker, C., Whittles, L. K., Imai, N., Bhatia, S. & Ferguson, N. M., 2021, In: International Journal of Infectious Diseases. 102, p. 463-471 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  23. Published

    Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions

    Gavenciak, T., Monrad, J. T., Leech, G., Sharma, M., Mindermann, S., Bhatt, Samir, Brauner, J. & Kulveit, J., 2022, In: PLoS Computational Biology. 18, 8, 14 p., 1010435.

    Research output: Contribution to journal › Journal article › Research › peer-review

  24. Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza

    Ghafari, M., Du Plessis, L., Raghwani, J., Bhatt, Samir, Xu, B., Pybus, O. G. & Katzourakis, A., 2022, In: MOLECULAR BIOLOGY AND EVOLUTION . 39, 2, 8 p., msac009.

    Research output: Contribution to journal › Journal article › Research › peer-review

  25. Vaccinating adolescents against SARS-CoV-2 in England: a risk–benefit analysis

    Gurdasani, D., Bhatt, Samir, Costello, A., Denaxas, S., Flaxman, S., Greenhalgh, T., Griffin, S., Hyde, Z., Katzourakis, A., McKee, M., Michie, S., Ratmann, O., Reicher, S., Scally, G., Tomlinson, C., Yates, C., Ziauddeen, H. & Pagel, C., 2021, In: Journal of the Royal Society of Medicine. 114, 11, p. 513-524 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 255978193