Samir Bhatt
Professor
Section of Epidemiology
Bartholinsgade 6Q, 2. sal
1356 København K
Introductory remarks on publicationslist
Google Scholar publication list https://scholar.google.com/citations?user=tL0x_vUAAAAJ&hl=en
Spatiotemporal and Seasonal Trends of Class A and B Notifiable Infectious Diseases in China: Retrospective Analysis
Zheng, J., Zhang, N., Shen, G., Liang, F., Zhao, Y., He, X., Wang, Y., He, R., Chen, W., Xue, H., Shen, Y., Fu, Y., Zhang, W. H., Zhang, L., Bhatt, Samir, Mao, Y. & Zhu, B., 2023, In: JMIR Public Health and Surveillance. 9, 19 p., e42820.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term exposure to air pollution and risk of SARS-CoV-2 infection and COVID-19 hospitalization or death: Danish nationwide cohort study
Zhang, Jiawei, Lim, Youn-Hee, So, Rina, Jørgensen, J. T., Mortensen, Laust Hvas, Napolitano, George, Cole-Hunter, Thomas, Loft, Steffen, Bhatt, Samir, Hoek, G., Brunekreef, B., Westendorp, Rudi GJ, Ketzel, M., Brandt, J., Lange, Theis, Kølsen-Fisher, T. & Andersen, Zorana Jovanovic, 2023, In: The European respiratory journal. 61, 6, 50 p.Research output: Contribution to journal › Journal article › Research › peer-review
The association between mechanical ventilator compatible bed occupancy and mortality risk in intensive care patients with COVID-19: a national retrospective cohort study
Wilde, H., Mellan, T., Hawryluk, I., Dennis, J. M., Denaxas, S., Pagel, C., Duncan, A., Bhatt, Samir, Flaxman, S., Mateen, B. A. & Vollmer, S. J., 2021, In: BMC Medicine. 19, 1, 213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel statistical framework for exploring the population dynamics and seasonality of mosquito populations
Whittaker, C., Winskill, P., Sinka, M., Pironon, S., Massey, C., Weiss, D. J., Nguyen, M., Gething, P. W., Kumar, A., Ghani, A. & Bhatt, Samir, 2022, In: Proceedings. Biological sciences. 289, 1972, 10 p., 20220089.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal dynamics of Anopheles stephensi and its implications for mosquito detection and emergent malaria control in the Horn of Africa
Whittaker, Charles Frederick, Hamlet, A., Sherrard-Smith, E., Winskill, P., Cuomo-Dannenburg, G., Walker, P. G. T., Sinka, M., Pironon, S., Kumar, A., Ghani, A., Bhatt, Samir & Churcher, T. S., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 8, 9 p., e2216142120.Research output: Contribution to journal › Journal article › Research › peer-review
Indirect effects of the COVID-19 pandemic on malaria intervention coverage, morbidity, and mortality in Africa: a geospatial modelling analysis
Weiss, D. J., Bertozzi-Villa, A., Rumisha, S. F., Amratia, P., Arambepola, R., Battle, K. E., Cameron, E., Chestnutt, E., Gibson, H. S., Harris, J., Keddie, S., Millar, J. J., Rozier, J., Symons, T. L., Vargas-Ruiz, C., Hay, S. I., Smith, D. L., Alonso, P. L., Noor, A. M., Bhatt, S. & 1 others, , 2021, In: The Lancet Infectious Diseases. 21, 1, p. 59-69 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria
Watson, O. J., Alhaffar, M., Mehchy, Z., Whittaker, C., Akil, Z., Brazeau, N. F., Cuomo-Dannenburg, G., Hamlet, A., Thompson, H. A., Baguelin, M., FitzJohn, R. G., Knock, E., Lees, J. A., Whittles, L. K., Mellan, T., Winskill, P., Bhatt, S., Djaafara, B. A., Donnelly, C. A., Flaxman, S. & 15 others, , Jan 2021, In: Nature Communications. 12, 1, 13 p., 2394.Research output: Contribution to journal › Journal article › Research › peer-review
The impact of COVID-19 and strategies for mitigation and suppression in low- And middle-income countries
Walker, P. G. T., Whittaker, C., Watson, O. J., Baguelin, M., Winskill, P., Hamlet, A., Djafaara, B. A., Cucunubá, Z., Mesa, D. O., Green, W., Thompson, H., Nayagam, S., Ainslie, K. E. C., Bhatia, S., Bhatt, S., Boonyasiri, A., Boyd, O., Brazeau, N. F., Cattarino, L., Cuomo-Dannenburg, G. & 29 others, , 2020, In: Science. 369, 6502, p. 413-422 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England
Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., Hinsley, W. R., Laydon, D. J., Dabrera, G., O’Toole, Á., Amato, R., Ragonnet-Cronin, M., Harrison, I., Jackson, B., Ariani, C. V., Boyd, O., Loman, N. J., McCrone, J. T., Gonçalves, S., Jørgensen, D. & 14 others, , 13 May 2021, In: Nature. 593, p. 266-269 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A unified machine learning approach to time series forecasting applied to demand at emergency departments
Vollmer, M. A. C., Glampson, B., Mellan, T., Mishra, S., Mercuri, L., Costello, C., Klaber, R., Cooke, G., Flaxman, S. & Bhatt, Samir, 2021, In: BMC Emergency Medicine. 21, 1, 14 p., 9.Research output: Contribution to journal › Journal article › Research › peer-review
Using hawkes processes to model imported and local malaria cases in near-elimination settings
Unwin, J. T. H., Routledge, I., Flaxman, S., Rizoiu, M. A., Lai, S., Cohen, J., Weiss, D. J., Mishra, S. & Bhatt, Samir, 2021, In: PLOS Computational Biology. 17, 4, e1008830.Research output: Contribution to journal › Journal article › Research › peer-review
State-level tracking of COVID-19 in the United States
Unwin, H. J. T., Mishra, S., Bradley, V. C., Gandy, A., Mellan, T. A., Coupland, H., Ish-Horowicz, J., Vollmer, M. A. C., Whittaker, C., Filippi, S. L., Xi, X., Monod, M., Ratmann, O., Hutchinson, M., Valka, F., Zhu, H., Hawryluk, I., Milton, P., Ainslie, K. E. C., Baguelin, M. & 33 others, , 2020, In: Nature Communications. 11, 6189 .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global, regional, and national minimum estimates of children affected by COVID-19-associated orphanhood and caregiver death, by age and family circumstance up to Oct 31, 2021: an updated modelling study
Unwin, H. J. T., Hillis, S., Cluver, L., Flaxman, S., Goldman, P. S., Butchart, A., Bachman, G., Rawlings, L., Donnelly, C. A., Ratmann, O., Green, P., Nelson, C. A., Blenkinsop, A., Bhatt, Samir, Desmond, C., Villaveces, A. & Sherr, L., 2022, In: The Lancet Child & Adolescent Health. 6, 4, p. 249-259 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
PriorVAE: Encoding spatial priors with variational autoencoders for small-area estimation
Semenova, E., Xu, Y., Howes, A., Rashid, T., Bhatt, Samir, Mishra, S. & Flaxman, S., 2022, In: Journal of the Royal Society Interface. 19, 191, 11 p., 20220094.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Track Omicron's spread with molecular data
Scott, L., Hsiao, N., Moyo, S., Singh, L., Tegally, H., Dor, G., Maes, P., Pybus, O. G., Kraemer, M. U. G., Semenova, E., Bhatt, Samir, Flaxman, S., Faria, N. R. & de Oliveira, T., 2021, In: Science. 374, 6574, p. 1454-1455 10 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Modeling DREAMS impact: trends in new HIV diagnoses among women attending antenatal care clinics in DREAMS countries
Saul, J., Cooney, C., Hosseini, P. R., Beamon, T., Toiv, N., Bhatt, Samir, Zaidi, I. & Birx, D., 2022, In: AIDS. 36, p. S51-S59 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inference of malaria reproduction numbers in three elimination settings by combining temporal data and distance metrics
Routledge, I., Unwin, H. J. T. & Bhatt, Samir, 2021, In: Scientific Reports. 11, 1, 14495.Research output: Contribution to journal › Journal article › Research › peer-review
Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach
Routledge, I., Pascual, M. (ed.), Lai, S., Battle, K. E., Ghani, A. C., Gomez-Rodriguez, M., Gustafson, K. B., Mishra, S., Unwin, J., Proctor, J. L., Tatem, A. J., Li, Z. & Bhatt, Samir, 2020, (E-pub ahead of print) In: PLOS Computational Biology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cancer burden among adolescents and young adults in relation to childhood adversity: a nationwide life-course cohort study of 1.2 million individuals
Rod, Naja Hulvej, Bengtsson, J., Elsenburg, Leonie K., Davies, Megan, Taylor-Robinson, D., Bhatt, Samir & Rieckmann, Andreas, 2023, In: The Lancet Regional Health - Europe. 27, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The overlapping burden of the three leading causes of disability and death in sub-Saharan African children
LBD Triple Burden Collaborators, L. T. B. C., 2022, In: Nature Communications. 13, 1, 7457.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees
Penn, M. J., Scheidwasser, Neil Alexandre, Penn, J., Donnelly, C. A., Duchene, David & Bhatt, Samir, 2023, In: Genome Biology and Evolution. 15, 12, 17 p., evad213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intrinsic randomness in epidemic modelling beyond statistical uncertainty
Penn, M. J., Laydon, D. J., Penn, J., Whittaker, Charles Frederick, Morgenstern, C., Ratmann, O., Mishra, S., Pakkanen, M. S., Donnelly, C. A. & Bhatt, Samir, 2023, In: Communications Physics. 6, 1, 9 p., 146.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unifying incidence and prevalence under a time-varying general branching process
Pakkanen, M. S., Miscouridou, X., Penn, M. J., Whittaker, Charles Frederick, Berah, T., Mishra, S., Mellan, T. A. & Bhatt, Samir, 2023, In: Journal of Mathematical Biology. 87, 2, 34 p., 35.Research output: Contribution to journal › Journal article › Research › peer-review
Have deaths from COVID-19 in Europe plateaued due to herd immunity?
Okell, L., Verity, R., Watson, O., Mishra, S., Walker, P., Whittaker, C., Katzourakis, A., Donnelly, C., Riley, S., Ghani, A. C., Gandy, A., Flaxman, S., Ferguson, N. & Bhatt, Samir, 20 Jun 2020, In: The Lancet.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Misclassification bias in estimating clinical severity of SARS-CoV-2 variants – Authors' reply
Nyberg, T., Ferguson, N. M., Blake, J., Hinsley, W., Bhatt, Samir, De Angelis, D., Thelwall, S. & Presanis, A. M., 2022, In: The Lancet. 400, 10355, p. 809-810 2 p.Research output: Contribution to journal › Letter › Research › peer-review
Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study
Nyberg, T., Ferguson, N. M., Nash, S. G., Webster, H. H., Flaxman, S., Andrews, N., Hinsley, W., Bernal, J. L., Kall, M., Bhatt, S., Blomquist, P., Zaidi, A., Volz, E., Aziz, N. A., Harman, K., Funk, S., Abbott, S., Hope, R., Charlett, A., Chand, M. & 7 others, , 2022, In: Lancet. 399, 10332, p. 1303-1312 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reduction in mobility and COVID-19 transmission
Nouvellet, P., Bhatia, S., Cori, A., Ainslie, K. E. C., Baguelin, M., Bhatt, S., Boonyasiri, A., Brazeau, N. F., Cattarino, L., Cooper, L. V., Coupland, H., Cucunuba, Z. M., Cuomo-Dannenburg, G., Dighe, A., Djaafara, B. A., Dorigatti, I., Eales, O. D., van Elsland, S. L., Nascimento, F. F., FitzJohn, R. G. & 30 others, , 2021, In: Nature Communications. 12, 1, 1090.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms
Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Danish Pathology Life Course (PATHOLIFE) cohort: a register based cohort extending upon a national tissue biobank
Yde, Pernille, Bartholdy, Andreas, Gjerdrum, Lise Mette Rahbek, Westendorp, Rudi GJ, Mortensen, Laust Hvas, Bhatt, Samir & Jensen, Majken Karoline, 2023, In: BMJ Open. 13, 4, 10 p., e068483.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool
Nash, R. K., Bhatt, Samir, Cori, A. & Nouvellet, P., 2023, In: PLOS Computational Biology. 19, 8, 14 p., e1011439.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Severity of respiratory tract infections depends on the infectious dose. Perspectives for the next pandemic
Mølbak, Kåre, Sørensen, Thorkild I.A., Bhatt, Samir, Lyngse, Frederik Plesner, Simonsen, L. & Aaby, P., 2024, In: Frontiers in Public Health. 12, 4 p., 1391719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effectiveness of social distancing measures and lockdowns for reducing transmission of COVID-19 in non-healthcare, community-based settings
Murphy, C., Lim, W. W., Mills, C., Wong, J. Y., Chen, D., Xie, Y., Li, M., Gould, S., Xin, H., Cheung, J. K., Bhatt, Samir, Cowling, B. J. & Donnelly, C. A., 2023, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 381, 2257, 29 p., 20230132.Research output: Contribution to journal › Review › Research › peer-review
- Published
Regularised B-splines Projected Gaussian Process Priors to Estimate Time-trends in Age-specific COVID-19 Deaths
Monod, M., Blenkinsop, A., Brizzi, A., Chen, Y., Cardoso Correia Perello, C., Jogarah, V., Wang, Y., Flaxman, S., Bhatt, Samir & Ratmann, O., 2023, In: Bayesian Analysis. 18, 3, 31 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
π VAE: a stochastic process prior for Bayesian deep learning with MCMC
Mishra, S., Flaxman, S., Berah, T., Zhu, H., Pakkanen, M. & Bhatt, Samir, 2022, In: Statistics and Computing. 32, 6, 16 p., 96.Research output: Contribution to journal › Journal article › Research › peer-review
A COVID-19 model for local authorities of the United Kingdom
Mishra, S., Scott, J. A., Laydon, D. J., Zhu, H., Ferguson, N. M., Bhatt, Samir, Flaxman, S. & Gandy, A., 2022, In: Journal of the Royal Statistical Society. Series A: Statistics in Society. 185, p. S86-S95 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England
Mishra, S., Mindermann, S., Sharma, M., Whittaker, C., Mellan, T. A., Wilton, T., Klapsa, D., Mate, R., Fritzsche, M., Zambon, M., Ahuja, J., Howes, A., Miscouridou, X., Nason, G. P., Ratmann, O., Semenova, E., Leech, G., Sandkuehler, J. F., Rogers-Smith, C., Vollmer, M. & 10 others, , 2021, In: EClinicalMedicine. 39, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparing the responses of the UK, Sweden and Denmark to COVID-19 using counterfactual modelling
Mishra, S., Scott, J. A., Laydon, D. J., Flaxman, S., Gandy, A., Mellan, T. A., Unwin, H. J. T., Vollmer, M., Coupland, Helen Louise, Ratmann, O., Monod, M., Zhu, H. H., Cori, A., Gaythorpe, K. A. M., Whittles, L. K., Whittaker, C., Donnelly, C. A., Ferguson, N. M. & Bhatt, Samir, 2021, In: Scientific Reports. 11, 1, 16342.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases
Mehrjou, A., Soleymani, A., Abyaneh, A., Bhatt, Samir, Schölkopf, B. & Bauer, S., 2024, (E-pub ahead of print) In: PLOS Computational Biology. 19, 1, e1010799.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Context-specific emergence and growth of the SARS-CoV-2 Delta variant
McCrone, J. T., Hill, V., Bajaj, S., Pena, R. E., Lambert, B. C., Inward, R., Bhatt, S., Volz, E., Ruis, C., Dellicour, S., Baele, G., Zarebski, A. E., Sadilek, A., Wu, N., Schneider, A., Ji, X., Raghwani, J., Jackson, B., Colquhoun, R., O’Toole, Á. & 21 others, , 2022, In: Nature. 610, 7930, p. 154-160 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effectiveness assessment of non-pharmaceutical interventions: lessons learned from the COVID-19 pandemic
Lison, A., Banholzer, N., Sharma, M., Mindermann, S., Unwin, H. J. T., Mishra, S., Stadler, T., Bhatt, Samir, Ferguson, N. M., Brauner, J. & Vach, W., 2023, In: The Lancet Public Health. 8, 4, p. e311-e317 7 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Mask wearing in community settings reduces SARS-CoV-2 transmission
Leech, G., Rogers-Smith, C., Monrad, J. T., Sandbrink, J. B., Snodin, B., Zinkov, R., Rader, B., Brownstein, J. S., Gal, Y., Bhatt, Samir, Sharma, M., Mindermann, S., Brauner, J. M. & Aitchison, L., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 23, 9 p., e2119266119.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impact of proactive and reactive vaccination strategies for health-care workers against MERS-CoV: a mathematical modelling study
Laydon, D. J., Cauchemez, S., Hinsley, W. R., Bhatt, Samir & Ferguson, N. M., 2023, In: The Lancet Global Health. 11, 5, p. E759-E769 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Modelling the impact of the tier system on SARS-CoV-2 transmission in the UK between the first and second national lockdowns
Laydon, D. J., Mishra, S., Hinsley, W. R., Samartsidis, P., Flaxman, S., Gandy, A., Ferguson, N. M. & Bhatt, Samir, 2021, In: BMJ Open. 11, 4, 6 p., e050346.Research output: Contribution to journal › Journal article › Research › peer-review
Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’
Lavezzo, E., Franchin, E., Ciavarella, C., Cuomo-Dannenburg, G., Barzon, L., Del Vecchio, C., Rossi, L., Manganelli, R., Loregian, A., Navarin, N., Abate, D., Sciro, M., Merigliano, S., De Canale, E., Vanuzzo, M. C., Besutti, V., Saluzzo, F., Onelia, F., Pacenti, M., Parisi, S. G. & 31 others, , 2020, In: Nature. 584, 7821, p. 425-429 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Novel Epidemic Metrics to Communicate Outbreak Risk at the Municipality Level: Dengue and Zika in the Dominican Republic
Kingston, R., Routledge, I., Bhatt, Samir & Bowman, L. R., 2022, In: Viruses. 14, 1, 18 p., 162.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
- Published
Machine learning models of healthcare expenditures predicting mortality: A cohort study of spousal bereaved Danish individuals
Katsiferis, Alexandros, Bhatt, Samir, Mortensen, Laust Hvas, Mishra, S., Jensen, Majken Karoline & Westendorp, Rudi GJ, 2023, In: PLoS ONE. 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Predicting mortality risk after a fall in older adults using health care spending patterns: a population-based cohort study
Katsiferis, Alexandros, Mortensen, Laust Hvas, Khurana, Mark Poulsen, Mishra, S., Jensen, Majken Karoline & Bhatt, Samir, 2023, In: Age and Ageing. 52, 8, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Predicting the future distribution of antibiotic resistance using time series forecasting and geospatial modelling
Jeffrey, B., Aanensen, D. M., Croucher, N. J. & Bhatt, Samir, 2021, In: Wellcome Open Research. 5, p. 1-26 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study
Hogan, A. B., Jewell, B. L., Sherrard-Smith, E., Vesga, J. F., Watson, O. J., Whittaker, C., Hamlet, A., Smith, J. A., Winskill, P., Verity, R., Baguelin, M., Lees, J. A., Whittles, L. K., Ainslie, K. E. C., Bhatt, S., Boonyasiri, A., Brazeau, N. F., Cattarino, L., Cooper, L. V., Coupland, H. & 34 others, , 1 Sep 2020, In: The Lancet Global Health. 8, 9, p. e1132-e1141Research output: Contribution to journal › Journal article › Research › peer-review
ID: 255978193
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Cancer burden among adolescents and young adults in relation to childhood adversity: a nationwide life-course cohort study of 1.2 million individuals
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
52
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Long-term exposure to air pollution and risk of SARS-CoV-2 infection and COVID-19 hospitalization or death: Danish nationwide cohort study
Research output: Contribution to journal › Journal article › Research › peer-review
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A novel statistical framework for exploring the population dynamics and seasonality of mosquito populations
Research output: Contribution to journal › Journal article › Research › peer-review
Published