Samir Bhatt
Professor
Section of Epidemiology
Bartholinsgade 6Q, 2. sal
1356 København K
Introductory remarks on publicationslist
Google Scholar publication list https://scholar.google.com/citations?user=tL0x_vUAAAAJ&hl=en
Spatiotemporal and Seasonal Trends of Class A and B Notifiable Infectious Diseases in China: Retrospective Analysis
Zheng, J., Zhang, N., Shen, G., Liang, F., Zhao, Y., He, X., Wang, Y., He, R., Chen, W., Xue, H., Shen, Y., Fu, Y., Zhang, W. H., Zhang, L., Bhatt, Samir, Mao, Y. & Zhu, B., 2023, In: JMIR Public Health and Surveillance. 9, 19 p., e42820.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Long-term exposure to air pollution and risk of SARS-CoV-2 infection and COVID-19 hospitalization or death: Danish nationwide cohort study
Zhang, Jiawei, Lim, Youn-Hee, So, Rina, Jørgensen, J. T., Mortensen, Laust Hvas, Napolitano, George, Cole-Hunter, Thomas, Loft, Steffen, Bhatt, Samir, Hoek, G., Brunekreef, B., Westendorp, Rudi GJ, Ketzel, M., Brandt, J., Lange, Theis, Kølsen-Fisher, T. & Andersen, Zorana Jovanovic, 2023, In: The European respiratory journal. 61, 6, 50 p.Research output: Contribution to journal › Journal article › Research › peer-review
The association between mechanical ventilator compatible bed occupancy and mortality risk in intensive care patients with COVID-19: a national retrospective cohort study
Wilde, H., Mellan, T., Hawryluk, I., Dennis, J. M., Denaxas, S., Pagel, C., Duncan, A., Bhatt, Samir, Flaxman, S., Mateen, B. A. & Vollmer, S. J., 2021, In: BMC Medicine. 19, 1, 213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A novel statistical framework for exploring the population dynamics and seasonality of mosquito populations
Whittaker, C., Winskill, P., Sinka, M., Pironon, S., Massey, C., Weiss, D. J., Nguyen, M., Gething, P. W., Kumar, A., Ghani, A. & Bhatt, Samir, 2022, In: Proceedings. Biological sciences. 289, 1972, 10 p., 20220089.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal dynamics of Anopheles stephensi and its implications for mosquito detection and emergent malaria control in the Horn of Africa
Whittaker, Charles Frederick, Hamlet, A., Sherrard-Smith, E., Winskill, P., Cuomo-Dannenburg, G., Walker, P. G. T., Sinka, M., Pironon, S., Kumar, A., Ghani, A., Bhatt, Samir & Churcher, T. S., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 8, 9 p., e2216142120.Research output: Contribution to journal › Journal article › Research › peer-review
Indirect effects of the COVID-19 pandemic on malaria intervention coverage, morbidity, and mortality in Africa: a geospatial modelling analysis
Weiss, D. J., Bertozzi-Villa, A., Rumisha, S. F., Amratia, P., Arambepola, R., Battle, K. E., Cameron, E., Chestnutt, E., Gibson, H. S., Harris, J., Keddie, S., Millar, J. J., Rozier, J., Symons, T. L., Vargas-Ruiz, C., Hay, S. I., Smith, D. L., Alonso, P. L., Noor, A. M., Bhatt, S. & 1 others, , 2021, In: The Lancet Infectious Diseases. 21, 1, p. 59-69 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria
Watson, O. J., Alhaffar, M., Mehchy, Z., Whittaker, C., Akil, Z., Brazeau, N. F., Cuomo-Dannenburg, G., Hamlet, A., Thompson, H. A., Baguelin, M., FitzJohn, R. G., Knock, E., Lees, J. A., Whittles, L. K., Mellan, T., Winskill, P., Bhatt, S., Djaafara, B. A., Donnelly, C. A., Flaxman, S. & 15 others, , Jan 2021, In: Nature Communications. 12, 1, 13 p., 2394.Research output: Contribution to journal › Journal article › Research › peer-review
The impact of COVID-19 and strategies for mitigation and suppression in low- And middle-income countries
Walker, P. G. T., Whittaker, C., Watson, O. J., Baguelin, M., Winskill, P., Hamlet, A., Djafaara, B. A., Cucunubá, Z., Mesa, D. O., Green, W., Thompson, H., Nayagam, S., Ainslie, K. E. C., Bhatia, S., Bhatt, S., Boonyasiri, A., Boyd, O., Brazeau, N. F., Cattarino, L., Cuomo-Dannenburg, G. & 29 others, , 2020, In: Science. 369, 6502, p. 413-422 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England
Volz, E., Mishra, S., Chand, M., Barrett, J. C., Johnson, R., Geidelberg, L., Hinsley, W. R., Laydon, D. J., Dabrera, G., O’Toole, Á., Amato, R., Ragonnet-Cronin, M., Harrison, I., Jackson, B., Ariani, C. V., Boyd, O., Loman, N. J., McCrone, J. T., Gonçalves, S., Jørgensen, D. & 14 others, , 13 May 2021, In: Nature. 593, p. 266-269 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A unified machine learning approach to time series forecasting applied to demand at emergency departments
Vollmer, M. A. C., Glampson, B., Mellan, T., Mishra, S., Mercuri, L., Costello, C., Klaber, R., Cooke, G., Flaxman, S. & Bhatt, Samir, 2021, In: BMC Emergency Medicine. 21, 1, 14 p., 9.Research output: Contribution to journal › Journal article › Research › peer-review
Using hawkes processes to model imported and local malaria cases in near-elimination settings
Unwin, J. T. H., Routledge, I., Flaxman, S., Rizoiu, M. A., Lai, S., Cohen, J., Weiss, D. J., Mishra, S. & Bhatt, Samir, 2021, In: PLOS Computational Biology. 17, 4, e1008830.Research output: Contribution to journal › Journal article › Research › peer-review
State-level tracking of COVID-19 in the United States
Unwin, H. J. T., Mishra, S., Bradley, V. C., Gandy, A., Mellan, T. A., Coupland, H., Ish-Horowicz, J., Vollmer, M. A. C., Whittaker, C., Filippi, S. L., Xi, X., Monod, M., Ratmann, O., Hutchinson, M., Valka, F., Zhu, H., Hawryluk, I., Milton, P., Ainslie, K. E. C., Baguelin, M. & 33 others, , 2020, In: Nature Communications. 11, 6189 .Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global, regional, and national minimum estimates of children affected by COVID-19-associated orphanhood and caregiver death, by age and family circumstance up to Oct 31, 2021: an updated modelling study
Unwin, H. J. T., Hillis, S., Cluver, L., Flaxman, S., Goldman, P. S., Butchart, A., Bachman, G., Rawlings, L., Donnelly, C. A., Ratmann, O., Green, P., Nelson, C. A., Blenkinsop, A., Bhatt, Samir, Desmond, C., Villaveces, A. & Sherr, L., 2022, In: The Lancet Child & Adolescent Health. 6, 4, p. 249-259 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
PriorVAE: Encoding spatial priors with variational autoencoders for small-area estimation
Semenova, E., Xu, Y., Howes, A., Rashid, T., Bhatt, Samir, Mishra, S. & Flaxman, S., 2022, In: Journal of the Royal Society Interface. 19, 191, 11 p., 20220094.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Track Omicron's spread with molecular data
Scott, L., Hsiao, N., Moyo, S., Singh, L., Tegally, H., Dor, G., Maes, P., Pybus, O. G., Kraemer, M. U. G., Semenova, E., Bhatt, Samir, Flaxman, S., Faria, N. R. & de Oliveira, T., 2021, In: Science. 374, 6574, p. 1454-1455 10 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Modeling DREAMS impact: trends in new HIV diagnoses among women attending antenatal care clinics in DREAMS countries
Saul, J., Cooney, C., Hosseini, P. R., Beamon, T., Toiv, N., Bhatt, Samir, Zaidi, I. & Birx, D., 2022, In: AIDS. 36, p. S51-S59 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Inference of malaria reproduction numbers in three elimination settings by combining temporal data and distance metrics
Routledge, I., Unwin, H. J. T. & Bhatt, Samir, 2021, In: Scientific Reports. 11, 1, 14495.Research output: Contribution to journal › Journal article › Research › peer-review
Tracking progress towards malaria elimination in China: Individual-level estimates of transmission and its spatiotemporal variation using a diffusion network approach
Routledge, I., Pascual, M. (ed.), Lai, S., Battle, K. E., Ghani, A. C., Gomez-Rodriguez, M., Gustafson, K. B., Mishra, S., Unwin, J., Proctor, J. L., Tatem, A. J., Li, Z. & Bhatt, Samir, 2020, (E-pub ahead of print) In: PLOS Computational Biology.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Cancer burden among adolescents and young adults in relation to childhood adversity: a nationwide life-course cohort study of 1.2 million individuals
Rod, Naja Hulvej, Bengtsson, J., Elsenburg, Leonie K., Davies, Megan, Taylor-Robinson, D., Bhatt, Samir & Rieckmann, Andreas, 2023, In: The Lancet Regional Health - Europe. 27, 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The overlapping burden of the three leading causes of disability and death in sub-Saharan African children
LBD Triple Burden Collaborators, L. T. B. C., 2022, In: Nature Communications. 13, 1, 7457.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Leaping through Tree Space: Continuous Phylogenetic Inference for Rooted and Unrooted Trees
Penn, M. J., Scheidwasser, Neil Alexandre, Penn, J., Donnelly, C. A., Duchene, David & Bhatt, Samir, 2023, In: Genome Biology and Evolution. 15, 12, 17 p., evad213.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Intrinsic randomness in epidemic modelling beyond statistical uncertainty
Penn, M. J., Laydon, D. J., Penn, J., Whittaker, Charles Frederick, Morgenstern, C., Ratmann, O., Mishra, S., Pakkanen, M. S., Donnelly, C. A. & Bhatt, Samir, 2023, In: Communications Physics. 6, 1, 9 p., 146.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Unifying incidence and prevalence under a time-varying general branching process
Pakkanen, M. S., Miscouridou, X., Penn, M. J., Whittaker, Charles Frederick, Berah, T., Mishra, S., Mellan, T. A. & Bhatt, Samir, 2023, In: Journal of Mathematical Biology. 87, 2, 34 p., 35.Research output: Contribution to journal › Journal article › Research › peer-review
Have deaths from COVID-19 in Europe plateaued due to herd immunity?
Okell, L., Verity, R., Watson, O., Mishra, S., Walker, P., Whittaker, C., Katzourakis, A., Donnelly, C., Riley, S., Ghani, A. C., Gandy, A., Flaxman, S., Ferguson, N. & Bhatt, Samir, 20 Jun 2020, In: The Lancet.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Misclassification bias in estimating clinical severity of SARS-CoV-2 variants – Authors' reply
Nyberg, T., Ferguson, N. M., Blake, J., Hinsley, W., Bhatt, Samir, De Angelis, D., Thelwall, S. & Presanis, A. M., 2022, In: The Lancet. 400, 10355, p. 809-810 2 p.Research output: Contribution to journal › Letter › Research › peer-review
Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study
Nyberg, T., Ferguson, N. M., Nash, S. G., Webster, H. H., Flaxman, S., Andrews, N., Hinsley, W., Bernal, J. L., Kall, M., Bhatt, S., Blomquist, P., Zaidi, A., Volz, E., Aziz, N. A., Harman, K., Funk, S., Abbott, S., Hope, R., Charlett, A., Chand, M. & 7 others, , 2022, In: Lancet. 399, 10332, p. 1303-1312 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reduction in mobility and COVID-19 transmission
Nouvellet, P., Bhatia, S., Cori, A., Ainslie, K. E. C., Baguelin, M., Bhatt, S., Boonyasiri, A., Brazeau, N. F., Cattarino, L., Cooper, L. V., Coupland, H., Cucunuba, Z. M., Cuomo-Dannenburg, G., Dighe, A., Djaafara, B. A., Dorigatti, I., Eales, O. D., van Elsland, S. L., Nascimento, F. F., FitzJohn, R. G. & 30 others, , 2021, In: Nature Communications. 12, 1, 1090.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Gompertz Law emerges naturally from the inter-dependencies between sub-components in complex organisms
Yde, Pernille, Jensen, Majken Karoline, Mitarai, Namiko & Bhatt, Samir, 2024, In: Scientific Reports. 14, 1, 11 p., 1196.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Danish Pathology Life Course (PATHOLIFE) cohort: a register based cohort extending upon a national tissue biobank
Yde, Pernille, Bartholdy, Andreas, Gjerdrum, Lise Mette Rahbek, Westendorp, Rudi GJ, Mortensen, Laust Hvas, Bhatt, Samir & Jensen, Majken Karoline, 2023, In: BMJ Open. 13, 4, 10 p., e068483.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating the epidemic reproduction number from temporally aggregated incidence data: A statistical modelling approach and software tool
Nash, R. K., Bhatt, Samir, Cori, A. & Nouvellet, P., 2023, In: PLOS Computational Biology. 19, 8, 14 p., e1011439.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Severity of respiratory tract infections depends on the infectious dose. Perspectives for the next pandemic
Mølbak, Kåre, Sørensen, Thorkild I.A., Bhatt, Samir, Lyngse, Frederik Plesner, Simonsen, L. & Aaby, P., 2024, In: Frontiers in Public Health. 12, 4 p., 1391719.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effectiveness of social distancing measures and lockdowns for reducing transmission of COVID-19 in non-healthcare, community-based settings
Murphy, C., Lim, W. W., Mills, C., Wong, J. Y., Chen, D., Xie, Y., Li, M., Gould, S., Xin, H., Cheung, J. K., Bhatt, Samir, Cowling, B. J. & Donnelly, C. A., 2023, In: Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 381, 2257, 29 p., 20230132.Research output: Contribution to journal › Review › Research › peer-review
- Published
Regularised B-splines Projected Gaussian Process Priors to Estimate Time-trends in Age-specific COVID-19 Deaths
Monod, M., Blenkinsop, A., Brizzi, A., Chen, Y., Cardoso Correia Perello, C., Jogarah, V., Wang, Y., Flaxman, S., Bhatt, Samir & Ratmann, O., 2023, In: Bayesian Analysis. 18, 3, 31 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
π VAE: a stochastic process prior for Bayesian deep learning with MCMC
Mishra, S., Flaxman, S., Berah, T., Zhu, H., Pakkanen, M. & Bhatt, Samir, 2022, In: Statistics and Computing. 32, 6, 16 p., 96.Research output: Contribution to journal › Journal article › Research › peer-review
A COVID-19 model for local authorities of the United Kingdom
Mishra, S., Scott, J. A., Laydon, D. J., Zhu, H., Ferguson, N. M., Bhatt, Samir, Flaxman, S. & Gandy, A., 2022, In: Journal of the Royal Statistical Society. Series A: Statistics in Society. 185, p. S86-S95 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Changing composition of SARS-CoV-2 lineages and rise of Delta variant in England
Mishra, S., Mindermann, S., Sharma, M., Whittaker, C., Mellan, T. A., Wilton, T., Klapsa, D., Mate, R., Fritzsche, M., Zambon, M., Ahuja, J., Howes, A., Miscouridou, X., Nason, G. P., Ratmann, O., Semenova, E., Leech, G., Sandkuehler, J. F., Rogers-Smith, C., Vollmer, M. & 10 others, , 2021, In: EClinicalMedicine. 39, 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
Comparing the responses of the UK, Sweden and Denmark to COVID-19 using counterfactual modelling
Mishra, S., Scott, J. A., Laydon, D. J., Flaxman, S., Gandy, A., Mellan, T. A., Unwin, H. J. T., Vollmer, M., Coupland, Helen Louise, Ratmann, O., Monod, M., Zhu, H. H., Cori, A., Gaythorpe, K. A. M., Whittles, L. K., Whittaker, C., Donnelly, C. A., Ferguson, N. M. & Bhatt, Samir, 2021, In: Scientific Reports. 11, 1, 16342.Research output: Contribution to journal › Journal article › Research › peer-review
- E-pub ahead of print
Pyfectious: An individual-level simulator to discover optimal containment policies for epidemic diseases
Mehrjou, A., Soleymani, A., Abyaneh, A., Bhatt, Samir, Schölkopf, B. & Bauer, S., 2024, (E-pub ahead of print) In: PLOS Computational Biology. 19, 1, e1010799.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Context-specific emergence and growth of the SARS-CoV-2 Delta variant
McCrone, J. T., Hill, V., Bajaj, S., Pena, R. E., Lambert, B. C., Inward, R., Bhatt, S., Volz, E., Ruis, C., Dellicour, S., Baele, G., Zarebski, A. E., Sadilek, A., Wu, N., Schneider, A., Ji, X., Raghwani, J., Jackson, B., Colquhoun, R., O’Toole, Á. & 21 others, , 2022, In: Nature. 610, 7930, p. 154-160 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Effectiveness assessment of non-pharmaceutical interventions: lessons learned from the COVID-19 pandemic
Lison, A., Banholzer, N., Sharma, M., Mindermann, S., Unwin, H. J. T., Mishra, S., Stadler, T., Bhatt, Samir, Ferguson, N. M., Brauner, J. & Vach, W., 2023, In: The Lancet Public Health. 8, 4, p. e311-e317 7 p.Research output: Contribution to journal › Review › Research › peer-review
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Mask wearing in community settings reduces SARS-CoV-2 transmission
Leech, G., Rogers-Smith, C., Monrad, J. T., Sandbrink, J. B., Snodin, B., Zinkov, R., Rader, B., Brownstein, J. S., Gal, Y., Bhatt, Samir, Sharma, M., Mindermann, S., Brauner, J. M. & Aitchison, L., 2022, In: Proceedings of the National Academy of Sciences of the United States of America. 119, 23, 9 p., e2119266119.Research output: Contribution to journal › Journal article › Research › peer-review
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Impact of proactive and reactive vaccination strategies for health-care workers against MERS-CoV: a mathematical modelling study
Laydon, D. J., Cauchemez, S., Hinsley, W. R., Bhatt, Samir & Ferguson, N. M., 2023, In: The Lancet Global Health. 11, 5, p. E759-E769 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
Modelling the impact of the tier system on SARS-CoV-2 transmission in the UK between the first and second national lockdowns
Laydon, D. J., Mishra, S., Hinsley, W. R., Samartsidis, P., Flaxman, S., Gandy, A., Ferguson, N. M. & Bhatt, Samir, 2021, In: BMJ Open. 11, 4, 6 p., e050346.Research output: Contribution to journal › Journal article › Research › peer-review
Suppression of a SARS-CoV-2 outbreak in the Italian municipality of Vo’
Lavezzo, E., Franchin, E., Ciavarella, C., Cuomo-Dannenburg, G., Barzon, L., Del Vecchio, C., Rossi, L., Manganelli, R., Loregian, A., Navarin, N., Abate, D., Sciro, M., Merigliano, S., De Canale, E., Vanuzzo, M. C., Besutti, V., Saluzzo, F., Onelia, F., Pacenti, M., Parisi, S. G. & 31 others, , 2020, In: Nature. 584, 7821, p. 425-429 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
Novel Epidemic Metrics to Communicate Outbreak Risk at the Municipality Level: Dengue and Zika in the Dominican Republic
Kingston, R., Routledge, I., Bhatt, Samir & Bowman, L. R., 2022, In: Viruses. 14, 1, 18 p., 162.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The limits of the constant-rate birth-death prior for phylogenetic tree topology inference
Khurana, Mark Poulsen, Scheidwasser, Neil Alexandre, Penn, M. J., Bhatt, Samir & Duchene, David, 2024, In: Systematic Biology. 73, 1, p. 235–246 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Machine learning models of healthcare expenditures predicting mortality: A cohort study of spousal bereaved Danish individuals
Katsiferis, Alexandros, Bhatt, Samir, Mortensen, Laust Hvas, Mishra, S., Jensen, Majken Karoline & Westendorp, Rudi GJ, 2023, In: PLoS ONE. 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Predicting mortality risk after a fall in older adults using health care spending patterns: a population-based cohort study
Katsiferis, Alexandros, Mortensen, Laust Hvas, Khurana, Mark Poulsen, Mishra, S., Jensen, Majken Karoline & Bhatt, Samir, 2023, In: Age and Ageing. 52, 8, 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Predicting the future distribution of antibiotic resistance using time series forecasting and geospatial modelling
Jeffrey, B., Aanensen, D. M., Croucher, N. J. & Bhatt, Samir, 2021, In: Wellcome Open Research. 5, p. 1-26 26 p.Research output: Contribution to journal › Journal article › Research › peer-review
Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study
Hogan, A. B., Jewell, B. L., Sherrard-Smith, E., Vesga, J. F., Watson, O. J., Whittaker, C., Hamlet, A., Smith, J. A., Winskill, P., Verity, R., Baguelin, M., Lees, J. A., Whittles, L. K., Ainslie, K. E. C., Bhatt, S., Boonyasiri, A., Brazeau, N. F., Cattarino, L., Cooper, L. V., Coupland, H. & 34 others, , 1 Sep 2020, In: The Lancet Global Health. 8, 9, p. e1132-e1141Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Application of referenced thermodynamic integration to Bayesian model selection
Hawryluk, I., Mishra, S., Flaxman, S., Bhatt, Samir & Mellan, T. A., 2023, In: PLoS ONE. 18, 8, 16 p., e0289889.Research output: Contribution to journal › Journal article › Research › peer-review
Inference of COVID-19 epidemiological distributions from Brazilian hospital data
Hawryluk, I., Mellan, T. A., Hoeltgebaum, H., Mishra, S., Schnekenberg, R. P., Whittaker, C., Zhu, H., Gandy, A., Donnelly, C. A., Flaxman, S. & Bhatt, Samir, Nov 2020, In: Journal of the Royal Society Interface. 16 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Gaussian Process Nowcasting: Application to COVID-19 Mortality Reporting
Hawryluk, I., Hoeltgebaum, H., Mishra, S., Miscouridou, X., Schnekenberg, R. P., Whittaker, Charles Frederick, Vollmer, M., Flaxman, S., Bhatt, Samir & Mellan, T. A., 2021, p. 1258-1268. 11 p.Research output: Contribution to conference › Paper › Research › peer-review
Vaccinating adolescents against SARS-CoV-2 in England: a risk–benefit analysis
Gurdasani, D., Bhatt, Samir, Costello, A., Denaxas, S., Flaxman, S., Greenhalgh, T., Griffin, S., Hyde, Z., Katzourakis, A., McKee, M., Michie, S., Ratmann, O., Reicher, S., Scally, G., Tomlinson, C., Yates, C., Ziauddeen, H. & Pagel, C., 2021, In: Journal of the Royal Society of Medicine. 114, 11, p. 513-524 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
Purifying Selection Determines the Short-Term Time Dependency of Evolutionary Rates in SARS-CoV-2 and pH1N1 Influenza
Ghafari, M., Du Plessis, L., Raghwani, J., Bhatt, Samir, Xu, B., Pybus, O. G. & Katzourakis, A., 2022, In: MOLECULAR BIOLOGY AND EVOLUTION . 39, 2, 8 p., msac009.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seasonal variation in SARS-CoV-2 transmission in temperate climates: A Bayesian modelling study in 143 European regions
Gavenciak, T., Monrad, J. T., Leech, G., Sharma, M., Mindermann, S., Bhatt, Samir, Brauner, J. & Kulveit, J., 2022, In: PLoS Computational Biology. 18, 8, 14 p., 1010435.Research output: Contribution to journal › Journal article › Research › peer-review
Database of epidemic trends and control measures during the first wave of COVID-19 in mainland China
Fu, H., Wang, H., Xi, X., Boonyasiri, A., Wang, Y., Hinsley, W., Fraser, K. J., McCabe, R., Olivera Mesa, D., Skarp, J., Ledda, A., Dewé, T., Dighe, A., Winskill, P., van Elsland, S. L., Ainslie, K. E. C., Baguelin, M., Bhatt, S., Boyd, O., Brazeau, N. F. & 41 others, , 2021, In: International Journal of Infectious Diseases. 102, p. 463-471 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
No evidence of sustained nonzoonotic Plasmodium knowlesi transmission in Malaysia from modelling malaria case data
Fornace, K. M., Topazian, H. M., Routledge, I., Asyraf, S., Jelip, J., Lindblade, K. A., Jeffree, M. S., Ruiz Cuenca, P., Bhatt, Samir, Ahmed, K., Ghani, A. C. & Drakeley, C., 2023, In: Nature Communications. 14, 1, 2945.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Assessment of COVID-19 as the Underlying Cause of Death Among Children and Young People Aged 0 to 19 Years in the US
Flaxman, S., Whittaker, C., Semenova, E., Rashid, T., Parks, R. M., Blenkinsop, A., Unwin, H. J. T., Mishra, S., Bhatt, Samir, Gurdasani, D. & Ratmann, O., 2023, In: JAMA network open. 6, 1, 9 p., e2253590.Research output: Contribution to journal › Journal article › Research › peer-review
Estimating the effects of non-pharmaceutical interventions on COVID-19 in Europe
Flaxman, S., Mishra, S., Gandy, A., Unwin, H. J. T., Mellan, T. A., Coupland, H., Whittaker, C., Zhu, H., Berah, T., Eaton, J. W., Monod, M., Perez-Guzman, P. N., Schmit, N., Cilloni, L., Ainslie, K. E. C., Baguelin, M., Boonyasiri, A., Boyd, O., Cattarino, L., Cooper, L. V. & 31 others, , 2020, In: Nature. 584, 7820, p. 257-261 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mapping malaria incidence using routine health facility surveillance data in Uganda
Epstein, A., Namuganga, J. F., Nabende, I., Kamya, E. V., Kamya, M. R., Dorsey, G., Sturrock, H., Bhatt, Samir, Rodriguez-Barraquer, I. & Greenhouse, B., 2023, In: BMJ Global Health. 8, 5, 10 p., 011137.Research output: Contribution to journal › Journal article › Research › peer-review
Resurgence of malaria in Uganda despite sustained indoor residual spraying and repeated long lasting insecticidal net distributions
Epstein, A., Maiteki-sebuguzi, C., Namuganga, J. F., Nankabirwa, J. I., Gonahasa, S., Opigo, J., Staedke, S. G., Rutazaana, D., Arinaitwe, E., Kamya, M. R., Bhatt, Samir, Rodríguez-barraquer, I., Greenhouse, B., Donnelly, M. J., Dorsey, G. & Ashton, R. (ed.), 2022, In: PLOS Global Public Health. 2, 9, 18 p., e0000676.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic characterization and epidemiology of an emerging SARS-CoV-2 variant in Delhi, India
Dhar, M. S., Marwal, R., Radhakrishnan, V. S., Ponnusamy, K., Jolly, B., Bhoyar, R. C., Sardana, V., Naushin, S., Rophina, M., Mellan, T. A., Mishra, S., Whittaker, C., Fatihi, S., Datta, M., Singh, P., Sharma, U., Ujjainiya, R., Bhatheja, N., Divakar, M. K., Singh, M. K. & 27 others, , 2021, In: Science. 374, 6570, p. 995-999 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Estimating fine age structure and time trends in human contact patterns from coarse contact data: The Bayesian rate consistency model
Dan, S., Chen, Y., Chen, Y., Monod, M., Jaeger, V. K., Bhatt, Samir, Karch, A., Ratmann, O. & Machine Learning & Global Health network, M. L. &. G. H. N., 2023, In: PLOS Computational Biology. 19, 6, 30 p., e1011191.Research output: Contribution to journal › Journal article › Research › peer-review
Quantifying Changes in Vaccine Coverage in Mainstream Media as a Result of the COVID-19 Outbreak: Text Mining Study
Christensen, B., Laydon, D., Chelkowski, T., Jemielniak, D., Vollmer, M., Bhatt, Samir & Krawczyk, K., 2022, In: JMIR Infodemiology. 2, 2, 15 p., e35121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Seq2Seq Surrogates of Epidemic Models to Facilitate Bayesian Inference
Charles, G., Wolock, T. M., Winskill, P., Ghani, A., Bhatt, Samir & Flaxman, S., 2023, AAAI-23 Special Tracks. Williams, B., Chen, Y. & Neville, J. (eds.). AAAI Press, p. 14170-14177 8 p. (Proceedings of the 37th AAAI Conference on Artificial Intelligence, AAAI 2023, Vol. 37).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
Evolution and epidemic spread of SARS-CoV-2 in Brazil
Candido, D. S., Claro, I. M., de Jesus, J. G., Souza, W. M., Moreira, F. R. R., Dellicour, S., Mellan, T. A., du Plessis, L., Pereira, R. H. M., Sales, F. C. S., Manuli, E. R., Thézé, J., Almeida, L., Menezes, M. T., Voloch, C. M., Fumagalli, M. J., Coletti, T. M., da Silva, C. A. M., Ramundo, M. S., Amorim, M. R. & 58 others, , 4 Sep 2020, In: Science. 369, 6508, p. 1255-1260 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Spatial and temporal fluctuations in COVID-19 fatality rates in Brazilian hospitals
Brizzi, A., Whittaker, C., Servo, L. M. S., Hawryluk, I., Prete, C. A., de Souza, W. M., Aguiar, R. S., Araujo, L. J. T., Bastos, L. S., Blenkinsop, A., Buss, L. F., Candido, D., Castro, M. C., Costa, S. F., Croda, J., de Souza Santos, A. A., Dye, C., Flaxman, S., Fonseca, P. L. C., Geddes, V. E. V. & 21 others, , 2022, In: Nature Medicine. 28, 7, p. 1476-1485 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global disparities in SARS-CoV-2 genomic surveillance
Communicable Diseases Genomics Network (Australia and New Zealand), C. D. G. N. (. A. N. Z., COVID-19 Impact Project, C. I. P., Danish Covid-19 Genome Consortium, D. C. G. C., Fiocruz COVID-19 Genomic Surveillance Network, F. C. G. S. N., GISAID core curation team, G. C. C. T., Network for Genomic Surveillance in South Africa (NGS-SA), N. F. G. S. I. S. A. (., Swiss SARS-CoV-2 Sequencing Consortium, S. S. S. C. & Bulgarian SARS-CoV-2 sequencing group, B. S. S. G., 2022, In: Nature Communications. 13, p. 7003 1 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Global disparities in SARS-CoV-2 genomic surveillance
Brito, A. F., Semenova, E., Dudas, G., Hassler, G. W., Kalinich, C. C., Kraemer, M. U. G., Ho, J., Tegally, H., Githinji, G., Agoti, C. N., Matkin, L. E., Whittaker, C., Howden, B. P., Sintchenko, V., Zuckerman, N. S., Mor, O., Blankenship, H. M., de Oliveira, T., Lin, R. T. P., Siqueira, M. M. & 26 others, , 2022, (medRxiv).Research output: Working paper › Preprint › Research
- E-pub ahead of print
Bayesian workflow for time-varying transmission in stratified compartmental infectious disease transmission models
Bouman, J. A., Hauser, A., Grimm, S. L., Wohlfender, M., Bhatt, Samir, Semenova, E., Gelman, A., Althaus, C. L. & Riou, J., 2024, (E-pub ahead of print) In: PLOS Computational Biology. 20, 4 April, e1011575.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Semi-mechanistic Bayesian modelling of COVID-19 with renewal processes
Bhatt, Samir, Ferguson, N., Flaxman, S., Gandy, A., Mishra, S. & Scott, J. A., 2023, In: Journal of the Royal Statistical Society. Series A: Statistics in Society. 186, 4, p. 633-636 4 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An archetypes approach to malaria intervention impact mapping: a new framework and example application
Bertozzi-Villa, A., Bever, C. A., Gerardin, J., Proctor, J. L., Wu, M., Harding, D., Hollingsworth, T. D., Bhatt, Samir & Gething, P. W., 2023, In: Malaria Journal. 22, 1, 22 p., 138.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Risk of hospitalisation associated with infection with SARS-CoV-2 omicron variant versus delta variant in Denmark: an observational cohort study
Bager, P., Wohlfahrt, J., Bhatt, S., Stegger, M., Legarth, R., Møller, C. H., Skov, R. L., Valentiner-Branth, P., Voldstedlund, M., Fischer, T. K., Simonsen, L., Kirkby, N. S., Thomsen, M. K., Spiess, K., Marving, E., Larsen, N. B., Lillebaek, T., Ullum, H., Mølbak, K., Krause, T. G. & 28 others, , 2022, In: The Lancet Infectious Diseases. 22, 7, p. 967-976 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Conflicting COVID-19 excess mortality estimates
Bager, P., Nielsen, J., Bhatt, Samir, Nielsen, L., Krause, T. G., Vestergaard, L. S. & The EuroMOMO Network, T. E. N., 2023, In: The Lancet. 401, 10375, p. 432-433 2 p.Research output: Contribution to journal › Letter › Research › peer-review
- Published
Long-Term Exposure to AIR Pollution and COVID-19 Mortality and Morbidity in DENmark: Who Is Most Susceptible? (AIRCODEN)
Andersen, Zorana Jovanovic, Zhang, Jiawei, Lim, Youn-Hee, So, Rina, Jørgensen, J. T., Mortensen, Laust Hvas, Napolitano, George, Cole-Hunter, Thomas, Loft, Steffen, Bhatt, Samir, Hoek, G., Brunekreef, B., Westendorp, Rudi GJ, Ketzel, M., Brandt, J., Lange, Theis & Kølsen-Fisher, T., 2023, In: Research report (Health Effects Institute). 214, 41 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
A dataset of non-pharmaceutical interventions on SARS-CoV-2 in Europe
Altman, G., Ahuja, J., Monrad, J. T., Dhaliwal, G., Rogers-Smith, C., Leech, G., Snodin, B., Sandbrink, J. B., Finnveden, L., Norman, A. J., Oehm, S. B., Sandkuehler, J. F., Kulveit, J., Flaxman, S., Gal, Y., Mishra, S., Bhatt, Samir, Sharma, M., Mindermann, S. & Brauner, J. M., 2022, In: Scientific Data. 9, 1, 9 p., 145.Research output: Contribution to journal › Editorial › Research › peer-review
Evidence of initial success for China exiting COVID-19 social distancing policy after achieving containment
Ainslie, K. E. C., Walters, C. E., Fu, H., Bhatia, S., Wang, H., Xi, X., Baguelin, M., Bhatt, S., Boonyasiri, A., Boyd, O., Cattarino, L., Ciavarella, C., Cucunuba, Z., Cuomo-Dannenburg, G., Dighe, A., Dorigatti, I., van Elsland, S. L., John, R. F., Gaythorpe, K., Ghani, A. C. & 22 others, , 2021, In: Wellcome Open Research. 5, p. 1-14 14 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 255978193
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Cancer burden among adolescents and young adults in relation to childhood adversity: a nationwide life-course cohort study of 1.2 million individuals
Research output: Contribution to journal › Journal article › Research › peer-review
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Long-term exposure to air pollution and risk of SARS-CoV-2 infection and COVID-19 hospitalization or death: Danish nationwide cohort study
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A novel statistical framework for exploring the population dynamics and seasonality of mosquito populations
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